Glyma17g13910 - SoyBase

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Report for Sequence Feature Glyma17g13910

Feature Type:	gene_model
Chromosome:	Gm17
Start:	10684507
stop:	10687817
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g13910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24890	AT	Annotation by Michelle Graham. TAIR10: purple acid phosphatase 24 \| chr4:12811510-12814440 REVERSE LENGTH=615	SoyBase	E_val: 2.00E-105	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0003993	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1378	KOG	Purple acid phosphatase	JGI		ISS
PTHR22953	Panther	ACID PHOSPHATASE RELATED	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_G0T440	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Purple acid phosphatases n=1 Tax=Glycine max RepID=G0T440_SOYBN	SoyBase	E_val: 3.00E-140	ISS
UniRef100_I1MUP8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUP8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g13910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g13910

Paralog	Evidence	Comments
Glyma05g03320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g13910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma17g13910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g13910

Limit To All Plant Sequences

>Glyma17g13910.1   sequence type=CDS   gene model=Glyma17g13910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGGTTCACCTGCACAGACTGTTGGTTGGCGTGACCATGGTTTCATACACACAAGTTTTCTCAAAAACCTTTGGCCAAATTTAGTGTATACATATCGATTAGGGCATCTATTGTCAGATGGTTCTTATATTTGGAGCAAGAAATATTCATTCAAGTCATCACCTTATCCTGGACAGGACTCACAGCAACGTGTTATCATATTTGGTGACATGGGGAAGGTAATAAGACTGTCTGAAACTGTCTTTGGGAGGAAGAACCTATCCAACACCGGATCATTTTATAACACTACAAATTTAGGTGGTCCGACTGAAAATAGAGCAAACTTTTGGTATGCAACGGATTATGGCATGTTTCGCTTCTGCATAGCTGACACTGAACATGATTGGAGGGAAGGATCAGAACAATACAAATTCATCGAGCATTGCCTTGCAACAGTAGACAGACAGAAACAACCCTGGTTGATTTTTGCTGCTCACCGTGTGCTTGGATATTCATCTGATTTTTGTGGGAAGAGAGAGTCTGCAGAGAGACTTTGGCAGAAATATAAAGTAGATATTGCAGTTTATGGCCATGTCCATAACAACGAAAGGACATGCCCCATTTATCAGTCTCGCTATTCCGGCGTTGTGAATGGAACAATTCATGTTGTTGCTGGAGGAGCAGGAAGCCACTTGTCAAACTTCAGCCAAGTAACCCCAAAGTGGAGTCTTTACAGAGACTACGACTTCGGGTTTGTCAAGTTGACAGCATTCGATCATTCATCTCTCCTCTTTGAATACAAGAAAAGCAGTGATGGAAAGGTCTACGATTCTTTTACCATTTCAAGGGATTACAAAGATGTCTTGGCCTGTGTGGATGATAGCTGTGAAGCAACCACTTCAGCAACTTGA

Predicted protein sequences of Glyma17g13910

Limit To All Plant Sequences

>Glyma17g13910.1   sequence type=predicted peptide   gene model=Glyma17g13910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCGSPAQTVGWRDHGFIHTSFLKNLWPNLVYTYRLGHLLSDGSYIWSKKYSFKSSPYPGQDSQQRVIIFGDMGKVIRLSETVFGRKNLSNTGSFYNTTNLGGPTENRANFWYATDYGMFRFCIADTEHDWREGSEQYKFIEHCLATVDRQKQPWLIFAAHRVLGYSSDFCGKRESAERLWQKYKVDIAVYGHVHNNERTCPIYQSRYSGVVNGTIHVVAGGAGSHLSNFSQVTPKWSLYRDYDFGFVKLTAFDHSSLLFEYKKSSDGKVYDSFTISRDYKDVLACVDDSCEATTSAT*

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